PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_551523088.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 90aa    MW: 10843.5 Da    PI: 9.7478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_551523088.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.42.4e-182090168
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkv 68
                           +fYn+YA e GFsvrk + +  + n++i+ r++vCs+eg ree++ k   ++++r++r+ tr+gCkak+++
  Traes_4AS_551523088.1 20 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCSREGCREEKHMKrkrEDRKRKPRNITRVGCKAKFVI 90
                           6*****************************************99988777889999***********9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-162090IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MAEYDGIVSR MFDSEEEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCSREGCR  60
EEKHMKRKRE DRKRKPRNIT RVGCKAKFVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774KREDRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.27e-39PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_014751141.15e-40PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5DXF11e-59W5DXF1_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.12e-38(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.12e-08FAR1-related sequence 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]